Pyrosequencing of the midgut transcriptome of the poplar leaf beetle Chrysomela tremulae reveals new gene families in Coleoptera

Insect Biochem Mol Biol. May-Jun 2009;39(5-6):403-13. doi: 10.1016/j.ibmb.2009.04.001. Epub 2009 Apr 11.

Abstract

The insect midgut is the primary target site for Bt-derived insecticides and Bt alternatives. However, despite extensive recent study, the precise role and nature of different Bt receptors remains a subject of considerable debate. This problem is fuelled by a lack of understanding of the genes expressed in the insect midgut and their physiological roles. The poplar leaf beetle, Chrysomela tremulae, is an important model for understanding the mode of action of, and resistance to, coleopteran-specific Bt toxins and currently shows the only known naturally occurring case of resistance to Cry3A toxins. Moreover it belongs to the same family as the corn rootworm, Diabrotica virgifera, an economically important beetle pest and target of hybrid corn expressing Cry3 toxins. Pyrosequencing is a fast and efficient way of defining the transcriptome of specific insect tissues such as the larval midgut. Here we use 454 based pyrosequencing to sample the larval midgut transcriptome of C. tremulae. We identify candidate genes of putative Bt receptors including transcripts encoding cadherin-like proteins, aminopeptidase N and alkaline phosphatase. We also describe a wealth of new transcripts predicting rapidly evolving gene families involved in plant tissue digestion, which have no homologs in the genome of the stored product pest the Red Flour beetle, Tribolium castaneum.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Coleoptera / chemistry
  • Coleoptera / classification*
  • Coleoptera / genetics*
  • Coleoptera / metabolism
  • Digestive System / chemistry
  • Digestive System / metabolism
  • Gene Expression Profiling*
  • Insect Proteins / chemistry
  • Insect Proteins / genetics*
  • Insect Proteins / metabolism
  • Microsatellite Repeats
  • Molecular Sequence Data
  • Multigene Family*
  • Phylogeny
  • Populus
  • Sequence Alignment
  • Sequence Analysis, DNA

Substances

  • Insect Proteins

Associated data

  • GENBANK/FJ654706
  • GENBANK/FJ654707
  • GENBANK/FJ654708
  • GENBANK/FJ654709
  • GENBANK/FJ654710
  • GENBANK/FJ654711
  • GENBANK/FJ654712
  • GENBANK/FJ654713
  • GENBANK/FJ654714
  • GENBANK/FJ654715
  • GENBANK/FJ654716
  • GENBANK/FJ654717
  • GENBANK/FJ654718
  • GENBANK/FJ654719
  • GENBANK/FJ654720
  • GENBANK/FJ654721
  • GENBANK/FJ654722
  • GENBANK/FJ654723
  • GENBANK/FJ654724
  • GENBANK/FJ654725
  • GENBANK/FJ654726
  • GENBANK/FJ654727