Coordinated movement of cytoplasmic and transmembrane domains of RyR1 upon gating

PLoS Biol. 2009 Apr 14;7(4):e85. doi: 10.1371/journal.pbio.1000085.

Abstract

Ryanodine receptor type 1 (RyR1) produces spatially and temporally defined Ca2+ signals in several cell types. How signals received in the cytoplasmic domain are transmitted to the ion gate and how the channel gates are unknown. We used EGTA or neuroactive PCB 95 to stabilize the full closed or open states of RyR1. Single-channel measurements in the presence of FKBP12 indicate that PCB 95 inverts the thermodynamic stability of RyR1 and locks it in a long-lived open state whose unitary current is indistinguishable from the native open state. We analyzed two datasets of 15,625 and 18,527 frozen-hydrated RyR1-FKBP12 particles in the closed and open conformations, respectively, by cryo-electron microscopy. Their corresponding three-dimensional structures at 10.2 A resolution refine the structure surrounding the ion pathway previously identified in the closed conformation: two right-handed bundles emerging from the putative ion gate (the cytoplasmic "inner branches" and the transmembrane "inner helices"). Furthermore, six of the identifiable transmembrane segments of RyR1 have similar organization to those of the mammalian Kv1.2 potassium channel. Upon gating, the distal cytoplasmic domains move towards the transmembrane domain while the central cytoplasmic domains move away from it, and also away from the 4-fold axis. Along the ion pathway, precise relocation of the inner helices and inner branches results in an approximately 4 A diameter increase of the ion gate. Whereas the inner helices of the K+ channels and of the RyR1 channel cross-correlate best with their corresponding open/closed states, the cytoplasmic inner branches, which are not observed in the K+ channels, appear to have at least as important a role as the inner helices for RyR1 gating. We propose a theoretical model whereby the inner helices, the inner branches, and the h1 densities together create an efficient novel gating mechanism for channel opening by relaxing two right-handed bundle structures along a common 4-fold axis.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Chelating Agents / pharmacology
  • Cryoelectron Microscopy
  • Egtazic Acid / pharmacology
  • Environmental Pollutants / pharmacology
  • Ion Channel Gating*
  • Kv1.2 Potassium Channel / chemistry
  • Models, Molecular
  • Molecular Sequence Data
  • Polychlorinated Biphenyls / pharmacology
  • Protein Stability / drug effects
  • Protein Structure, Tertiary
  • Rabbits
  • Ryanodine Receptor Calcium Release Channel / chemistry*
  • Ryanodine Receptor Calcium Release Channel / metabolism*
  • Ryanodine Receptor Calcium Release Channel / ultrastructure
  • Tacrolimus Binding Protein 1A / metabolism

Substances

  • Chelating Agents
  • Environmental Pollutants
  • Kv1.2 Potassium Channel
  • Ryanodine Receptor Calcium Release Channel
  • 2,2',3,5',6-pentachlorobiphenyl
  • Egtazic Acid
  • Polychlorinated Biphenyls
  • Tacrolimus Binding Protein 1A