Protein conformational flexibility from structure-free analysis of NMR dipolar couplings: quantitative and absolute determination of backbone motion in ubiquitin

Angew Chem Int Ed Engl. 2009;48(23):4154-7. doi: 10.1002/anie.200900476.

Abstract

A robust procedure for the determination of protein-backbone motions on time scales of pico- to milliseconds directly from residual dipolar couplings has been developed that requires no additional scaling relative to external references. The results for ubiquitin (blue in graph: experimental N-HN order parameters) correspond closely to the amplitude, nature, and distribution of motion found in a 400 ns molecular-dynamics trajectory of ubiquitin (red).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Motion*
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Conformation*
  • Ubiquitin / chemistry*

Substances

  • Ubiquitin