Validation and comparison of two quantitative real-time PCR assays for direct detection of DMD/BMD carriers

Clin Biochem. 2009 Aug;42(12):1291-9. doi: 10.1016/j.clinbiochem.2009.04.016. Epub 2009 May 8.

Abstract

Objectives: To develop a robust and reliable assay for direct identification of female carriers of deletions in the dystrophin gene.

Design and methods: We compared two quantitative real-time PCR approaches for the detection of the deletions of exons 4, 17, 47, and 50 in DMD/BMD carriers. One hundred and ten individuals from 26 unrelated families, including 8 large pedigrees characterized by having at least two DMD affected males, were studied. Carrier status of the subjects was also evaluated by MLPA.

Results: The results showed the gene dosage ratio of 0.99+/-0.14 and 1.09+/-0.19 for normal individuals and 0.48+/-0.06 and 0.50+/-0.10 for carriers in SYBR green and TaqMan probe assays, respectively. Carrier status was accurately attributed in 100% of cases and confirmed by MLPA.

Conclusion: Quantitative real-time PCR can be used as a direct method for carrier detection in female relatives of DMD patients with known deletions. The results are comparable to the MLPA data.

Publication types

  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Benzothiazoles
  • DNA Mutational Analysis / methods*
  • Diamines
  • Dystrophin / genetics*
  • Exons
  • Female
  • Fluorescent Dyes / metabolism
  • Gene Deletion
  • Heterozygote*
  • Humans
  • Male
  • Muscular Dystrophy, Duchenne / genetics*
  • Organic Chemicals / metabolism
  • Pedigree
  • Polymerase Chain Reaction / methods*
  • Quinolines
  • Reproducibility of Results

Substances

  • Benzothiazoles
  • Diamines
  • Dystrophin
  • Fluorescent Dyes
  • Organic Chemicals
  • Quinolines
  • SYBR Green I