Semaphorin 5B Mediates Synapse Elimination in Hippocampal Neurons

Neural Dev. 2009 May 23;4:18. doi: 10.1186/1749-8104-4-18.


Background: Semaphorins are known to play an important role in axon guidance and growth by triggering dynamic rearrangements of the actin cytoskeleton in the neuronal growth cone. Intriguingly, some of these guidance molecules are persistently expressed after axonal pathfinding and target recognition are completed. Although their function at these later stages is poorly understood, recent findings suggest a role for these proteins in regulating synaptic connections.

Results: Here we demonstrate that semaphorin 5B (Sema5B) regulates the elimination of synaptic connections in cultured hippocampal neurons. We show that Sema5B is proteolytically processed in neonatal brains and primary hippocampal cultures, resulting in the secretion of Sema5B fragments that include the biologically active semaphorin domain. Overexpression of full-length Sema5B in hippocampal neurons reduces synapse number while expression of a Sema5B construct lacking the semaphorin domain has no effect. Moreover, bath application with the proteolytically processed, secreted fragments containing the semaphorin domain of Sema5B, results in a rapid elimination of synaptic connections as demonstrated by time-lapse imaging. Conversely, depletion of endogenous Sema5B using RNA interference results in a significant increase in synapse number as well as a significant increase in the size of presynaptic and postsynaptic compartments.

Conclusion: Our results demonstrate that in addition to its role as a guidance cue, Sema5B regulates the development and maintenance of synapse size and number in hippocampal neurons. In addition, proteolytic cleavage of Sema5B results in the release of a potentially diffusible semaphorin domain that is a necessary component for its biological function in the regulation of synapse morphology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Animals, Newborn
  • Cells, Cultured
  • Culture Media, Conditioned / pharmacology
  • Disks Large Homolog 4 Protein
  • Embryo, Mammalian
  • Gene Expression Regulation, Developmental / physiology
  • Green Fluorescent Proteins / genetics
  • Guanylate Kinases
  • Hippocampus / cytology*
  • Humans
  • In Vitro Techniques
  • Intracellular Signaling Peptides and Proteins / metabolism
  • Male
  • Membrane Proteins / metabolism
  • Mice
  • Models, Biological
  • Neurons / cytology*
  • Neurons / physiology
  • RNA, Small Interfering / pharmacology
  • Rats
  • Semaphorins / genetics
  • Semaphorins / metabolism*
  • Sequence Deletion / genetics
  • Synapses / drug effects
  • Synapses / physiology*
  • Synaptophysin / metabolism
  • Transfection


  • Culture Media, Conditioned
  • Disks Large Homolog 4 Protein
  • Dlg4 protein, mouse
  • Intracellular Signaling Peptides and Proteins
  • Membrane Proteins
  • RNA, Small Interfering
  • Semaphorins
  • Synaptophysin
  • Green Fluorescent Proteins
  • Guanylate Kinases