Molecular epidemiology of rotaviruses among healthy calves in Japan: isolation of a novel bovine rotavirus bearing new P and G genotypes

Virus Res. 2009 Sep;144(1-2):250-7. doi: 10.1016/j.virusres.2009.05.005. Epub 2009 May 21.

Abstract

A total of 171 fecal specimens collected from healthy calves on a beef farm in Gifu Prefecture, Japan in 2006-2007 were examined for group A rotaviruses by RT-semi-nested PCR targeting the coding region for VP8*. Nine specimens were positive for rotavirus. G and P genotyping indicated that one strain was G10P[11]-like and six strains were considered to be the same unknown G and P genotypes. Among these six untypeable strains, one strain, AzuK-1, was adapted to cell culture and analyzed. Sequence and phylogenetic analyses of the full lengths of VP4 and VP7 genes revealed that AzuK-1 strain is a novel bovine rotavirus bearing new G21 and P[29] genotypes as confirmed by the RCWG. Furthermore, we detected G21P[29] rotaviruses in fecal specimens collected from healthy calves in Hokkaido, Japan during the period from 1997 to 1998. These findings suggest that novel G21P[29] rotaviruses have been widely prevalent among cattle for over 10 years in Japan.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antigens, Viral / genetics
  • Capsid Proteins / genetics
  • Cattle / virology*
  • Cluster Analysis
  • Feces / virology
  • Genotype
  • Japan
  • Molecular Epidemiology
  • Molecular Sequence Data
  • Phylogeny
  • Polymerase Chain Reaction
  • RNA, Viral / genetics*
  • RNA-Binding Proteins / genetics*
  • Reverse Transcriptase Polymerase Chain Reaction
  • Rotavirus / classification*
  • Rotavirus / genetics*
  • Rotavirus / isolation & purification
  • Sequence Analysis, DNA
  • Sequence Homology
  • Viral Nonstructural Proteins / genetics*

Substances

  • Antigens, Viral
  • Capsid Proteins
  • RNA, Viral
  • RNA-Binding Proteins
  • VP4 protein, Rotavirus
  • VP7 protein, Rotavirus
  • Viral Nonstructural Proteins
  • NS35 protein, rotavirus

Associated data

  • GENBANK/AB454420
  • GENBANK/AB454421
  • GENBANK/AB457634
  • GENBANK/AB457635
  • GENBANK/AB457636
  • GENBANK/AB457637
  • GENBANK/AB486010
  • GENBANK/AB486011