Database analysis of simulated and recorded electrophysiological datasets with PANDORA's toolbox

Neuroinformatics. 2009 Jun;7(2):93-111. doi: 10.1007/s12021-009-9048-z. Epub 2009 May 28.


Neuronal recordings and computer simulations produce ever growing amounts of data, impeding conventional analysis methods from keeping pace. Such large datasets can be automatically analyzed by taking advantage of the well-established relational database paradigm. Raw electrophysiology data can be entered into a database by extracting its interesting characteristics (e.g., firing rate). Compared to storing the raw data directly, this database representation is several orders of magnitude higher efficient in storage space and processing time. Using two large electrophysiology recording and simulation datasets, we demonstrate that the database can be queried, transformed and analyzed. This process is relatively simple and easy to learn because it takes place entirely in Matlab, using our database analysis toolbox, PANDORA. It is capable of acquiring data from common recording and simulation platforms and exchanging data with external database engines and other analysis toolboxes, which make analysis simpler and highly interoperable. PANDORA is available to be freely used and modified because it is open-source (

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Action Potentials / drug effects
  • Animals
  • Computer Simulation*
  • Database Management Systems*
  • Databases, Factual*
  • Electric Stimulation
  • Electrophysiological Phenomena*
  • Ganglia, Invertebrate / physiology
  • Globus Pallidus / physiology
  • Membrane Potentials / drug effects
  • Models, Neurological
  • Multivariate Analysis
  • Nephropidae
  • Neurons / drug effects
  • Neurons / physiology*
  • Patch-Clamp Techniques
  • Rats
  • Software*
  • Time Factors