The Chaohu is one of the largest five freshwater lakes in China. It provides freshwater for agriculture, life, and part of industry. The quality of water becomes worst and worst due to the toxic matter. In this study, we collected the samples from the sedimentary mud in the lake. The distribution of some potential hazardous trace elements (Cu, Ni, Cr, As, Pb, Cd, and Hg) in the sediments of western Chaohu Lake, has been determined and studied, and the enrichment factors, the index of geoaccumulation, and potential ecological risk were analyzed and calculated. The results show that: the levels of selected potential hazardous trace element vary from different sampling sites and significant anthropogenic impact of Pb and Cd occur in sediments. The contamination rank of Pb and Cd are moderate, and Pb has a light potential ecological risk, but Cd is heavy. The total potential ecological risk of the selected hazardous trace elements in this study in Chaohu Lake is moderate. Cluster and correlation analysis indicate that the selected potential hazardous trace element pollutant has different source and co-contamination also occur in sediments.