Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM

Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10644-8. doi: 10.1073/pnas.0904024106. Epub 2009 Jun 1.

Abstract

Rotaviruses, major causes of childhood gastroenteritis, are nonenveloped, icosahedral particles with double-strand RNA genomes. By the use of electron cryomicroscopy and single-particle reconstruction, we have visualized a rotavirus particle comprising the inner capsid coated with the trimeric outer-layer protein, VP7, at a resolution (4 A) comparable with that of X-ray crystallography. We have traced the VP7 polypeptide chain, including parts not seen in its X-ray crystal structure. The 3 well-ordered, 30-residue, N-terminal "arms" of each VP7 trimer grip the underlying trimer of VP6, an inner-capsid protein. Structural differences between free and particle-bound VP7 and between free and VP7-coated inner capsids may regulate mRNA transcription and release. The Ca(2+)-stabilized VP7 intratrimer contact region, which presents important neutralizing epitopes, is unaltered upon capsid binding.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigens, Viral / chemistry
  • Antigens, Viral / metabolism
  • Antigens, Viral / ultrastructure
  • Calcium / metabolism
  • Capsid Proteins / chemistry
  • Capsid Proteins / metabolism
  • Capsid Proteins / ultrastructure
  • Cryoelectron Microscopy / methods*
  • Crystallography, X-Ray
  • Models, Biological
  • Models, Molecular
  • Protein Multimerization
  • Protein Structure, Quaternary
  • Rotavirus / metabolism
  • Rotavirus / ultrastructure*
  • Viral Core Proteins / chemistry
  • Viral Core Proteins / metabolism
  • Viral Core Proteins / ultrastructure
  • Virion / metabolism
  • Virion / ultrastructure*

Substances

  • Antigens, Viral
  • Capsid Proteins
  • VP1 protein, Rotavirus
  • VP2 protein, Rotavirus
  • VP3 protein, Rotavirus
  • VP7 protein, Rotavirus
  • Viral Core Proteins
  • Calcium

Associated data

  • PDB/3GZT
  • PDB/3GZU
  • PDB/7RP
  • PDB/VP2
  • PDB/VP3
  • PDB/VP4
  • PDB/VP5
  • PDB/VP6
  • PDB/VP7