RNA secondary structure analysis using the Vienna RNA package

Curr Protoc Bioinformatics. 2009 Jun;Chapter 12:Unit12.2. doi: 10.1002/0471250953.bi1202s26.

Abstract

This unit documents how to use the Vienna RNA package for RNA secondary structure analysis. Possible tasks include structure prediction for single sequences, prediction of consensus structures, prediction of RNA-RNA interactions, and sequence design.

MeSH terms

  • Algorithms
  • Base Sequence
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • RNA / chemistry*
  • Sequence Analysis, RNA / methods
  • Software*

Substances

  • RNA