Alcanivorax hongdengensis sp. nov., an alkane-degrading bacterium isolated from surface seawater of the straits of Malacca and Singapore, producing a lipopeptide as its biosurfactant

Int J Syst Evol Microbiol. 2009 Jun;59(Pt 6):1474-9. doi: 10.1099/ijs.0.001552-0.

Abstract

A taxonomic study was carried out on strain A-11-3(T), which was isolated from an oil-enriched consortia from the surface seawater of Hong-Deng dock in the Straits of Malacca and Singapore. Cells were aerobic, Gram-negative, non-spore-forming irregular rods. The strain was catalase- and oxidase-negative. It grew on a restricted spectrum of organic compounds, including some organic acids and alkanes. 16S rRNA gene sequence comparisons showed that strain A-11-3(T) was most closely related to the type strains of Alcanivorax jadensis (96.8 % sequence similarity), Alcanivorax borkumensis (96.8 %), Alcanivorax dieselolei (94.8 %), Alcanivorax venustensis (94.2 %) and Alcanivorax balearicus (94.0 %). The predominant fatty acids were C(16 : 0) (31.2 %), C(18 : 1)omega7c (24.8 %), C(18 : 0) (9.6 %), C(12 : 0) (8.3 %), C(16 : 1)omega7c (8.3 %) and C(16 : 0) 3-OH (5.1 %). The G+C content of the genomic DNA was 54.7 mol%. Moreover, the strain produced lipopeptides as its surface-active compounds. According to physiological and biochemical tests, DNA-DNA hybridization results and sequence comparisons of the 16S-23S internal transcribed spacer, the gyrB gene and the alkane hydroxylase gene alkB1, strain A-11-3(T) was affiliated with the genus Alcanivorax but could be readily distinguished from recognized Alcanivorax species. Therefore strain A-11-3(T) represents a novel species of the genus Alcanivorax for which the name Alcanivorax hongdengensis sp. nov. is proposed. The type strain is A-11-3(T) (=CGMCC 1.7084(T)=LMG 24624(T)=MCCC 1A01496(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcanivoraceae / classification*
  • Alcanivoraceae / genetics
  • Alcanivoraceae / isolation & purification
  • Alcanivoraceae / physiology
  • Alkanes / metabolism*
  • Bacterial Proteins / genetics
  • Bacterial Typing Techniques
  • Base Composition
  • Biodegradation, Environmental
  • China
  • DNA, Bacterial / analysis
  • DNA, Ribosomal Spacer / analysis
  • Fatty Acids / analysis
  • Lipopeptides / biosynthesis*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phenotype
  • Phylogeny
  • Polymerase Chain Reaction / methods
  • RNA, Ribosomal, 16S / genetics
  • RNA, Ribosomal, 23S / genetics
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Species Specificity
  • Surface-Active Agents / metabolism

Substances

  • Alkanes
  • Bacterial Proteins
  • DNA, Bacterial
  • DNA, Ribosomal Spacer
  • Fatty Acids
  • Lipopeptides
  • RNA, Ribosomal, 16S
  • RNA, Ribosomal, 23S
  • Surface-Active Agents

Associated data

  • GENBANK/EU438896
  • GENBANK/EU438897
  • GENBANK/EU438898
  • GENBANK/EU438899
  • GENBANK/EU438901