Stream-riparian ecosystems are dynamic and complex entities that can support high levels of bird assemblage abundance and diversity. The myriad patches (e.g., aquatic, floodplain, riparian) found in the riverscape habitat mosaic attract a unique mixture of aquatic, semiaquatic, riparian, and upland birds, each uniquely utilizing the river corridor. Whereas standard morning bird surveys are widely used across ecosystems, the variety of bird guilds and the temporal habitat partitioning that likely occur in stream-riparian ecosystems argue for the inclusion of evening surveys. At 41 stream reaches in Vermont and Idaho, USA, we surveyed bird assemblages using a combination of morning and evening fixed-width transect counts. Student's paired t-tests showed that while bird abundance was not significantly different between morning and evening surveys, bird assemblage diversity (as measured by species richness, Shannon-Weiner's index, and Simpson's index) was significantly higher in the morning than in the evening. NMS ordinations of bird species and time (i.e., morning, evening) indicated that the structure of morning bird assemblages was different from that of evening assemblages. NMS further showed that a set of species was only found in evening surveys. The inclusion of evening counts in surveying bird assemblages in stream-riparian ecosystems has important experimental and ecological implications. Experimentally, the sole use of morning bird surveys may significantly underestimate the diversity and misrepresent the community composition of bird assemblages in these ecosystems. Ecologically, many of the birds detected in evening surveys were water-associated species that occupy high trophic levels and aerial insectivores that represent unique aquatic-terrestrial energy transfers.