DNA repair and DNA triplet repeat expansion: the impact of abasic lesions on triplet repeat DNA energetics

J Am Chem Soc. 2009 Jul 8;131(26):9354-60. doi: 10.1021/ja902161e.

Abstract

Enhanced levels of DNA triplet expansion are observed when base excision repair (BER) of oxidative DNA base damage (e.g., 8-oxo-dG) occurs at or near CAG repeat sequences. This observation suggests an interplay between processing mechanisms required for DNA repair and expansion pathways that yield genotypes associated with many neurological/developmental disorders. It has been proposed that DNA expansion involves the transient formation within the triplet repeat domains of non-native slipped DNA structures that are incorrectly processed by the BER machinery of repair during DNA synthesis. We show here that replacement within a triplet repeat bulge loop domain of a guanosine residue by an abasic site, the universal BER intermediate, increases the population of slipped/looped DNA structures relative to the corresponding lesion-free construct. Such abasic lesion-induced energetic enhancement of slipped/looped structures provides a linkage between BER and DNA expansion. We discuss how the BER machinery of repair may be influenced by abasic-induced energetic alterations in the properties of regions proximal to and/or within triplet repeat domains, thereby potentially modulating levels of DNA expansion.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry*
  • DNA Repair*
  • Guanosine / chemistry*
  • Hot Temperature
  • Nucleic Acid Conformation
  • Nucleic Acid Denaturation
  • Thermodynamics
  • Trinucleotide Repeat Expansion*

Substances

  • Guanosine
  • DNA