Verrucosispora lutea sp. nov., isolated from a mangrove sediment sample

Int J Syst Evol Microbiol. 2009 Sep;59(Pt 9):2269-73. doi: 10.1099/ijs.0.008813-0. Epub 2009 Jul 20.

Abstract

A novel Gram-positive, aerobic, spore-forming actinobacterium, designated strain YIM 013T, was isolated from a mangrove sediment sample and subjected to a polyphasic taxonomic study. The peptidoglycan type was A1gamma and the major whole-cell sugars contained glucose and xylose. The phospholipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannosides and some unknown phospholipids. The predominant menaquinone was MK-9(H4). The major fatty acids were iso-C15:0 and iso-C16:0. The genomic DNA G+C content was 69.3 mol%. blast search results based on an almost-complete 16S rRNA gene sequence showed that strain YIM 013T had the highest similarity with Verrucosispora gifhornensis DSM 44337T (98%) and phylogenetic analysis revealed that strain YIM 013T should be assigned to the genus Verrucosispora. The mean level of DNA-DNA relatedness between strain YIM 013T and V. gifhornensis DSM 44337T was 38.2%. Based on its phenotypic and genotypic characteristics, strain YIM 013T (=CCTCC AA207012T=KCTC 19195T) is proposed to be the type strain of a novel species, Verrucosispora lutea sp. nov.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aerobiosis
  • Bacterial Typing Techniques
  • Base Composition
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Glucose / analysis
  • Micromonosporaceae / chemistry
  • Micromonosporaceae / classification*
  • Micromonosporaceae / genetics
  • Micromonosporaceae / isolation & purification*
  • Microscopy, Electron, Scanning
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Peptidoglycan / analysis
  • Phospholipids / analysis
  • Phylogeny
  • Plants / microbiology*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Spores, Bacterial / cytology
  • Vitamin K 2 / analysis
  • Xylose / analysis

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Peptidoglycan
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • Xylose
  • Glucose

Associated data

  • GENBANK/EF191199