Chitinophaga rupis sp. nov., isolated from soil

Int J Syst Evol Microbiol. 2009 Nov;59(Pt 11):2830-3. doi: 10.1099/ijs.0.011163-0. Epub 2009 Jul 23.

Abstract

A Gram-negative, rod-shaped, deep yellow-pigmented bacterium, designated strain CS5-B1(T), was isolated from a soil sample collected from a cliff on Mara Island, south-west of Jeju, Republic of Korea. Comparative 16S rRNA gene sequence analysis showed that strain CS5-B1(T) fell within the radiation of the genus Chitinophaga with the closest relative being Chitinophaga japonensis IFO 16041(T) (97.2 % sequence similarity). Levels of 16S rRNA gene sequence similarity between strain CS5-B1(T) and other species of the genus Chitinophaga were 92.9-95.8 %. The dominant menaquinone was MK-7. The polar lipids contained phosphatidylethanolamine, a ninhydrin-positive lipid and an unknown lipid. The major fatty acids were iso-C(15 : 0), C(16 : 1)omega5c, C(16 : 0) and C(18 : 0), with iso-C(15 : 0) 3-OH and iso-C(17 : 0) 3-OH as the dominant hydroxy fatty acids. The G+C content of the DNA was 48.7 mol%. DNA-DNA relatedness between strain CS5-B1(T) and C. japonensis DSM 13484(T) was 5.8-7.9 %. On the basis of the phenotypic and DNA-DNA hybridization data, this bacterium represents a novel species of the genus Chitinophaga, for which the name Chitinophaga rupis sp. nov. is proposed. The type strain is CS5-B1(T) (=KCTC 22170(T)=DSM 21039(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteroidetes / classification
  • Bacteroidetes / genetics
  • Bacteroidetes / isolation & purification*
  • Bacteroidetes / metabolism
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Fatty Acids / chemistry
  • Fatty Acids / metabolism
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Soil Microbiology*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/FM865977