Algoriphagus lutimaris sp. nov., isolated from a tidal flat sediment

Int J Syst Evol Microbiol. 2010 Jan;60(Pt 1):200-204. doi: 10.1099/ijs.0.012682-0. Epub 2009 Jul 31.

Abstract

A Gram-negative, non-motile, non-spore-forming bacterial strain, S1-3(T), was isolated from a tidal flat sediment on the west coast of Korea and its taxonomic position was investigated. Strain S1-3(T) grew optimally at 30 degrees C and in the presence of 2 % (w/v) NaCl. Strain S1-3(T) contained MK-7 as the predominant menaquinone and C(16 : 1)omega7c and/or iso-C(15 : 0) 2-OH and iso-C(15 : 0) as the major fatty acids. The DNA G+C content was 41.4 mol%. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain S1-3(T) fell within the clade comprising Algoriphagus species, clustering with Algoriphagus halophilus IMSNU 14013(T), with which it exhibited 99.6 % 16S rRNA gene sequence similarity. The 16S rRNA gene sequence similarity between strain S1-3(T) and the type strains of other Algoriphagus species was 94.0-97.1 %. Differential phenotypic properties and phylogenetic and genetic distinctiveness of strain S1-3(T) demonstrated that this strain is distinguishable from the other Algoriphagus species as well as A. halophilus. On the basis of phenotypic, chemotaxonomic, phylogenetic and genetic data, strain S1-3(T) is considered to represent a novel species of the genus Algoriphagus, for which the name Algoriphagus lutimaris sp. nov. is proposed. The type strain is S1-3(T) (=KCTC 22630(T) =CCUG 57608(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteroidetes / classification*
  • Bacteroidetes / genetics
  • Bacteroidetes / isolation & purification*
  • Bacteroidetes / metabolism
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Fatty Acids / metabolism
  • Geologic Sediments / microbiology*
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/FJ669216