Decreasing fertility with increasing parity is considered to be a major constraint in the reproductive management of dairy cows. Even though pregnancy rates (PR) in mature cows have declined drastically in the last 50 years, it has remained constant in heifers. Early embryonic loss is a major cause for the loss of pregnancy in cows. Expression of developmentally important genes is vital for the function and survival of embryos. Hence, in this study, we compared the mRNA abundance of GLUT5, INFtau, HSP70, Na/K-ATPase, BAX, and BCL2 genes in the pre-implantation embryos of dairy heifers and mature cows. Heifers (n = 25) and cows (n = 20) were superovulated and artificially inseminated on the day of estrus. On day 7, the embryos were flushed and morphologically graded and RT-PCR was performed. HSP70 was expressed more in the grade I embryos in heifers than in cows, and in the grade I embryos of heifers than in grade II embryos of heifers. In pooled embryos (both grades I and II) of heifers and cows, expression for INFtau was greater in heifers than in cows. Grade I embryos had a higher expression of GLUT5 and Na/K-ATPase than the grade II embryos of cows. From this study, we conclude that there is differential expression of some developmentally important genes between embryos of heifers versus cows and between grades I and II embryos regardless of the embryo source. Future research will be necessary to elucidate any potential cause and effect between these genes and reduced PR observed in dairy cows.