The polyketide cyclase RemF from Streptomyces resistomycificus contains an unusual octahedral zinc binding site

FEBS Lett. 2009 Sep 3;583(17):2917-21. doi: 10.1016/j.febslet.2009.07.061. Epub 2009 Aug 6.

Abstract

RemF is a polyketide cyclase involved in the biosynthesis of the aromatic pentacyclic metabolite resistomycin in Streptomyces resistomycificus. The enzyme is a member of a structurally hitherto uncharacterized class of polyketide cyclases. The crystal structure of RemF was determined by SAD and refined to 1.2 A resolution. The enzyme subunit shows a beta-sandwich structure with a topology characteristic for the cupin fold. RemF contains a metal binding site located at the bottom of the predominantly hydrophobic active site cavity. A zinc ion is coordinated to four histidine side chains, and two water molecules in octahedral ligand sphere geometry, highly unusual for zinc binding sites in proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Benzopyrenes / chemistry
  • Benzopyrenes / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Models, Molecular
  • Molecular Sequence Data
  • Molecular Structure
  • Polyketide Synthases / chemistry*
  • Polyketide Synthases / genetics
  • Protein Conformation*
  • Protein Folding
  • Protein Subunits / chemistry
  • Protein Subunits / genetics
  • Streptomyces / enzymology*
  • Zinc / chemistry*

Substances

  • Bacterial Proteins
  • Benzopyrenes
  • Protein Subunits
  • resistomycin
  • Polyketide Synthases
  • Zinc