The molecular basis for the regulation of the cap-binding complex by the importins

Nat Struct Mol Biol. 2009 Sep;16(9):930-7. doi: 10.1038/nsmb.1649. Epub 2009 Aug 9.

Abstract

The binding of capped RNAs to the cap-binding complex (CBC) in the nucleus, and their dissociation from the CBC in the cytosol, represent essential steps in RNA processing. Here we show how the nucleocytoplasmic transport proteins importin-alpha and importin-beta have key roles in regulating these events. As a first step toward understanding the molecular basis for this regulation, we determined a 2.2-A resolution X-ray structure for a CBC-importin-alpha complex that provides a detailed picture for how importin-alpha binds to the CBP80 subunit of the CBC. Through a combination of biochemical studies, X-ray crystallographic information and small-angle scattering experiments, we then determined how importin-beta binds to the CBC through its CBP20 subunit. Together, these studies enable us to propose a model describing how importin-beta stimulates the dissociation of capped RNA from the CBC in the cytosol following its nuclear export.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Amino Acid Sequence
  • Crystallography, X-Ray
  • HeLa Cells
  • Humans
  • Models, Molecular
  • Molecular Sequence Data
  • Nuclear Cap-Binding Protein Complex / chemistry*
  • Nuclear Cap-Binding Protein Complex / metabolism
  • Protein Binding
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • RNA Caps / metabolism
  • alpha Karyopherins / chemistry*
  • alpha Karyopherins / metabolism
  • beta Karyopherins / chemistry*
  • beta Karyopherins / metabolism

Substances

  • Nuclear Cap-Binding Protein Complex
  • Protein Subunits
  • RNA Caps
  • alpha Karyopherins
  • beta Karyopherins

Associated data

  • PDB/3FEX
  • PDB/3FEY