Structural redesign of lipase B from Candida antarctica by circular permutation and incremental truncation

J Mol Biol. 2009 Oct 16;393(1):191-201. doi: 10.1016/j.jmb.2009.08.008. Epub 2009 Aug 13.

Abstract

Circular permutation of Candida antarctica lipase B yields several enzyme variants with substantially increased catalytic activity. To better understand the structural and functional consequences of protein termini reorganization, we have applied protein engineering and x-ray crystallography to cp283, one of the most active hydrolase variants. Our initial investigation has focused on the role of an extended surface loop, created by linking the native N- and C-termini, on protein integrity. Incremental truncation of the loop partially compensates for observed losses in secondary structure and the permutants' temperature of unfolding. Unexpectedly, the improvements are accompanied by quaternary-structure changes from monomer to dimer. The crystal structures of one truncated variant (cp283 Delta 7) in the apo-form determined at 1.49 A resolution and with a bound phosphonate inhibitor at 1.69 A resolution confirmed the formation of a homodimer by swapping of the enzyme's 35-residue N-terminal region. Separately, the new protein termini at amino acid positions 282/283 convert the narrow access tunnel to the catalytic triad into a broad crevice for accelerated substrate entry and product exit while preserving the native active-site topology for optimal catalytic turnover.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Candida / enzymology*
  • Crystallography, X-Ray
  • Lipase / chemistry*
  • Lipase / genetics
  • Lipase / metabolism*
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Engineering
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary

Substances

  • Lipase

Associated data

  • PDB/3ICV
  • PDB/3ICW