Evaluation of a combination of SIFT-MS and multivariate data analysis for the diagnosis of Mycobacterium bovis in wild badgers

Analyst. 2009 Sep;134(9):1922-7. doi: 10.1039/b905627k. Epub 2009 Jul 17.

Abstract

The currently accepted 'gold standard' tuberculosis (TB) detection method for veterinary applications is that of culturing from a tissue sample post mortem. The test is accurate, but growing Mycobacterium bovis is difficult and the process can take up to 12 weeks to return a diagnosis. In this paper we evaluate a much faster screening approach based on serum headspace analysis using selected ion flow tube mass spectrometry (SIFT-MS). SIFT-MS is a rapid, quantitative gas analysis technique, with sample analysis times of as little as a few seconds. Headspace from above serum samples from wild badgers, captured as part of a randomised trial, was analysed. Multivariate classification algorithms were then employed to extract a simple TB diagnosis from the complex multivariate response provided by the SIFT-MS instrument. This is the first time that such multivariate analysis has been applied to SIFT-MS data. An accuracy of TB discrimination of approximately 88% true positive was achieved which shows promise, but the corresponding false positive rate of 38% indicates that there is more work to do before this approach could replace the culture test. Recommendations for future work that could increase the performance are therefore proposed.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Animals
  • Animals, Wild / blood*
  • Cattle
  • False Positive Reactions
  • Gases / chemistry
  • Mass Spectrometry / methods
  • Multivariate Analysis
  • Mustelidae*
  • Mycobacterium bovis* / growth & development
  • Mycobacterium bovis* / isolation & purification
  • Tuberculosis / blood
  • Tuberculosis / diagnosis
  • Tuberculosis / veterinary*
  • Tuberculosis, Bovine / transmission
  • United Kingdom
  • Volatile Organic Compounds / blood

Substances

  • Gases
  • Volatile Organic Compounds