Kinetics of deamination and Cu(II)/H2O2/Ascorbate-induced formation of 5-methylcytosine glycol at CpG sites in duplex DNA

Nucleic Acids Res. 2009 Oct;37(19):6635-43. doi: 10.1093/nar/gkp615. Epub 2009 Aug 25.

Abstract

Mutation in p53 tumor suppressor gene is a hallmark of human cancers. Six major mutational hotspots in p53 contain methylated CpG (mCpG) sites, and C -->T transition is the most common mutation at these sites. It was hypothesized that the formation of 5-methylcytosine glycol induced by reactive oxygen species, its spontaneous deamination to thymine glycol and the miscoding property of the latter may account, in part, for the ubiquitous C -->T mutation at CpG site. Here, we assessed the kinetics of deamination for two diastereomers of 5-methylcytosine glycol in duplex DNA. Our results revealed that the half-lives for the deamination of the (5S,6S) and (5R,6R) diastereomers of 5-methylcytosine glycol in duplex DNA at 37 degrees C were 37.4 +/- 1.6 and 27.4 +/- 1.0 h, respectively. The deamination rates were only slightly lower than those for the two diastereomers in mononucleosides. Next, we assessed the formation of 5-methyl-2'-deoxycytidine glycol in the form of its deaminated product, namely, thymidine glycol (Tg), in methyl-CpG-bearing duplex DNA treated with Cu(II)/H(2)O(2)/ascorbate. LC-MS/MS quantification results showed that the yield of Tg is similar as that of 5-(hydroxymethyl)-2'-deoxycytidine. Together, our data support that the formation and deamination of 5-methylcytosine glycol may contribute significantly to the C -->T transition mutation at mCpG dinucleotide site.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Ascorbic Acid / chemistry
  • Chromatography, Liquid
  • Copper / chemistry
  • CpG Islands*
  • Cytosine / analogs & derivatives*
  • Cytosine / chemistry
  • DNA / chemistry*
  • Deamination
  • Deoxyribonucleotides / chemistry
  • Hydrogen Peroxide / chemistry
  • Kinetics
  • Tandem Mass Spectrometry
  • Thymidine / analogs & derivatives
  • Thymidine / chemistry

Substances

  • 5-methylcytosine glycol
  • Deoxyribonucleotides
  • thymidine glycol
  • Copper
  • Cytosine
  • DNA
  • Hydrogen Peroxide
  • Ascorbic Acid
  • Thymidine