Involvement of the beta clamp in methyl-directed mismatch repair in vitro

J Biol Chem. 2009 Nov 20;284(47):32782-91. doi: 10.1074/jbc.M109.054528. Epub 2009 Sep 25.


We have examined function of the bacterial beta replication clamp in the different steps of methyl-directed DNA mismatch repair. The mismatch-, MutS-, and MutL-dependent activation of MutH is unaffected by the presence or orientation of loaded beta clamp on either 3' or 5' heteroduplexes. Similarly, beta is not required for 3' or 5' mismatch-provoked excision when scored in the presence of gamma complex or in the presence of gamma complex and DNA polymerase III core components. However, mismatch repair does not occur in the absence of beta, an effect we attribute to a requirement for the clamp in the repair DNA synthesis step of the reaction. We have confirmed previous findings that beta clamp interacts specifically with MutS and MutL (López de Saro, F. J., Marinus, M. G., Modrich, P., and O'Donnell, M. (2006) J. Biol. Chem. 281, 14340-14349) and show that the mutator phenotype conferred by amino acid substitution within the MutS N-terminal beta-interaction motif is the probable result of instability coupled with reduced activity in multiple steps of the repair reaction. In addition, we have found that the DNA polymerase III alpha catalytic subunit interacts strongly and specifically with both MutS and MutL. Because interactions of polymerase III holoenzyme components with MutS and MutL appear to be of limited import during the initiation and excision steps of mismatch correction, we suggest that their significance might lie in the control of replication fork events in response to the sensing of DNA lesions by the repair system.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphatases / metabolism*
  • Base Pair Mismatch*
  • Blotting, Western
  • Catalytic Domain
  • DNA Polymerase III / genetics
  • DNA Repair Enzymes / metabolism
  • DNA Repair*
  • DNA, Superhelical
  • DNA-Binding Proteins / metabolism
  • Endodeoxyribonucleases / metabolism
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / metabolism*
  • In Vitro Techniques
  • MutL Proteins
  • MutS DNA Mismatch-Binding Protein / metabolism*
  • Mutation
  • Protein Binding
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Structure, Tertiary


  • DNA, Superhelical
  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • MutL protein, E coli
  • DNA Polymerase III
  • Endodeoxyribonucleases
  • methyl-directed mismatch repair protein, E coli
  • Adenosine Triphosphatases
  • MutL Proteins
  • MutS DNA Mismatch-Binding Protein
  • MutS protein, E coli
  • DNA Repair Enzymes