The Universal Protein Resource (UniProt) in 2010

doi:10.1093/nar/gkp846

. 2010 Jan;38(Database issue):D142-8.

doi: 10.1093/nar/gkp846. Epub 2009 Oct 20.

The Universal Protein Resource (UniProt) in 2010

UniProt Consortium¹

Collaborators, Affiliations

Collaborators

UniProt Consortium:
Rolf Apweiler, Maria Jesus Martin, Claire O'Donovan, Michele Magrane, Yasmin Alam-Faruque, Ricardo Antunes, Daniel Barrell, Benoit Bely, Mark Bingley, David Binns, Lawrence Bower, Paul Browne, Wei Mun Chan, Emily Dimmer, Ruth Eberhardt, Alexander Fedotov, Rebecca Foulger, John Garavelli, Rachael Huntley, Julius Jacobsen, Michael Kleen, Kati Laiho, Rasko Leinonen, Duncan Legge, Quan Lin, Wudong Liu, Jie Luo, Sandra Orchard, Samuel Patient, Diego Poggioli, Manuela Pruess, Matt Corbett, Giuseppe di Martino, Mike Donnelly, Pieter van Rensburg, Amos Bairoch, Lydie Bougueleret, Ioannis Xenarios, Severine Altairac, Andrea Auchincloss, Ghislaine Argoud-Puy, Kristian Axelsen, Delphine Baratin, Marie-Claude Blatter, Brigitte Boeckmann, Jerven Bolleman, Laurent Bollondi, Emmanuel Boutet, Silvia Braconi Quintaje, Lionel Breuza, Alan Bridge, Edouard deCastro, Luciane Ciapina, Danielle Coral, Elisabeth Coudert, Isabelle Cusin, Gwennaelle Delbard, Mikael Doche, Dolnide Dornevil, Paula Duek Roggli, Severine Duvaud, Anne Estreicher, Livia Famiglietti, Marc Feuermann, Sebastien Gehant, Nathalie Farriol-Mathis, Serenella Ferro, Elisabeth Gasteiger, Alain Gateau, Vivienne Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nicolas Hulo, Janet James, Silvia Jimenez, Florence Jungo, Thomas Kappler, Guillaume Keller, Corinne Lachaize, Lydie Lane-Guermonprez, Petra Langendijk-Genevaux, Vicente Lara, Philippe Lemercier, Damien Lieberherr, Tania de Oliveira Lima, Veronique Mangold, Xavier Martin, Patrick Masson, Madelaine Moinat, Anne Morgat, Anais Mottaz, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Violaine Pillet, Sylvain Poux, Monica Pozzato, Nicole Redaschi, Catherine Rivoire, Bernd Roechert, Michel Schneider, Christian Sigrist, Karin Sonesson, Sylvie Staehli, Eleanor Stanley, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Anne Lise Veuthey, Lina Yip, Luiz Zuletta, Cathy Wu, Cecilia Arighi, Leslie Arminski, Winona Barker, Chuming Chen, Yongxing Chen, Zhang-Zhi Hu, Hongzhan Huang, Raja Mazumder, Peter McGarvey, Darren A Natale, Jules Nchoutmboube, Natalia Petrova, Nisha Subramanian, Baris E Suzek, Uzoamaka Ugochukwu, Sona Vasudevan, C R Vinayaka, Lai Su Yeh, Jian Zhang

Affiliation

¹ The EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

PMID: 19843607
PMCID: PMC2808944
DOI: 10.1093/nar/gkp846

The Universal Protein Resource (UniProt) in 2010

UniProt Consortium. Nucleic Acids Res. 2010 Jan.

. 2010 Jan;38(Database issue):D142-8.

doi: 10.1093/nar/gkp846. Epub 2009 Oct 20.

Author

UniProt Consortium¹

Collaborators

UniProt Consortium:
Rolf Apweiler, Maria Jesus Martin, Claire O'Donovan, Michele Magrane, Yasmin Alam-Faruque, Ricardo Antunes, Daniel Barrell, Benoit Bely, Mark Bingley, David Binns, Lawrence Bower, Paul Browne, Wei Mun Chan, Emily Dimmer, Ruth Eberhardt, Alexander Fedotov, Rebecca Foulger, John Garavelli, Rachael Huntley, Julius Jacobsen, Michael Kleen, Kati Laiho, Rasko Leinonen, Duncan Legge, Quan Lin, Wudong Liu, Jie Luo, Sandra Orchard, Samuel Patient, Diego Poggioli, Manuela Pruess, Matt Corbett, Giuseppe di Martino, Mike Donnelly, Pieter van Rensburg, Amos Bairoch, Lydie Bougueleret, Ioannis Xenarios, Severine Altairac, Andrea Auchincloss, Ghislaine Argoud-Puy, Kristian Axelsen, Delphine Baratin, Marie-Claude Blatter, Brigitte Boeckmann, Jerven Bolleman, Laurent Bollondi, Emmanuel Boutet, Silvia Braconi Quintaje, Lionel Breuza, Alan Bridge, Edouard deCastro, Luciane Ciapina, Danielle Coral, Elisabeth Coudert, Isabelle Cusin, Gwennaelle Delbard, Mikael Doche, Dolnide Dornevil, Paula Duek Roggli, Severine Duvaud, Anne Estreicher, Livia Famiglietti, Marc Feuermann, Sebastien Gehant, Nathalie Farriol-Mathis, Serenella Ferro, Elisabeth Gasteiger, Alain Gateau, Vivienne Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nicolas Hulo, Janet James, Silvia Jimenez, Florence Jungo, Thomas Kappler, Guillaume Keller, Corinne Lachaize, Lydie Lane-Guermonprez, Petra Langendijk-Genevaux, Vicente Lara, Philippe Lemercier, Damien Lieberherr, Tania de Oliveira Lima, Veronique Mangold, Xavier Martin, Patrick Masson, Madelaine Moinat, Anne Morgat, Anais Mottaz, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Violaine Pillet, Sylvain Poux, Monica Pozzato, Nicole Redaschi, Catherine Rivoire, Bernd Roechert, Michel Schneider, Christian Sigrist, Karin Sonesson, Sylvie Staehli, Eleanor Stanley, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Anne Lise Veuthey, Lina Yip, Luiz Zuletta, Cathy Wu, Cecilia Arighi, Leslie Arminski, Winona Barker, Chuming Chen, Yongxing Chen, Zhang-Zhi Hu, Hongzhan Huang, Raja Mazumder, Peter McGarvey, Darren A Natale, Jules Nchoutmboube, Natalia Petrova, Nisha Subramanian, Baris E Suzek, Uzoamaka Ugochukwu, Sona Vasudevan, C R Vinayaka, Lai Su Yeh, Jian Zhang

Affiliation

¹ The EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

PMID: 19843607
PMCID: PMC2808944
DOI: 10.1093/nar/gkp846

Abstract

The primary mission of UniProt is to support biological research by maintaining a stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and querying interfaces freely accessible to the scientific community. UniProt is produced by the UniProt Consortium which consists of groups from the European Bioinformatics Institute (EBI), the Swiss Institute of Bioinformatics (SIB) and the Protein Information Resource (PIR). UniProt is comprised of four major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase, the UniProt Reference Clusters and the UniProt Metagenomic and Environmental Sequence Database. UniProt is updated and distributed every 3 weeks and can be accessed online for searches or download at http://www.uniprot.org.

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References

1. Leinonen R, Diez FG, Binns D, Fleischmann W, Lopez R, Apweiler R. UniProt archive. Bioinformatics. 2009;20:3236–3237. - PubMed
1. Wieser D, Kretschmann E, Apweiler R. Filtering erroneous protein annotation. Bioinformatics. 2004;20:i342–i347. - PubMed
1. Gattiker A, Michoud K, Rivoire C, Auchincloss AH, Coudert E, Lima T, Kersey P, Pagni M, Sigrist CJ, Lachaize C, et al. Automated annotation of microbial proteomes in SWISS-PROT. Comput. Biol. Chem. 2003;27:49–58. - PubMed
1. Fleischmann W, Moller S, Gateau A, Apweiler R. A novel method for automatic functional annotation of proteins. Bioinformatics. 1999;15:228–233. - PubMed
1. Wu CH, Nikolskaya A, Huang H, Yeh LS, Natale DA, Vinayaka CR, Hu ZZ, Mazumder R, Kumar S, Kourtesis P, et al. PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Res. 2004;32:D112–D114. - PMC - PubMed

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[1] Leinonen R, Diez FG, Binns D, Fleischmann W, Lopez R, Apweiler R. UniProt archive. Bioinformatics. 2009;20:3236–3237. - PubMed

[2] Leinonen R, Diez FG, Binns D, Fleischmann W, Lopez R, Apweiler R. UniProt archive. Bioinformatics. 2009;20:3236–3237. - PubMed

[3] Wieser D, Kretschmann E, Apweiler R. Filtering erroneous protein annotation. Bioinformatics. 2004;20:i342–i347. - PubMed

[4] Wieser D, Kretschmann E, Apweiler R. Filtering erroneous protein annotation. Bioinformatics. 2004;20:i342–i347. - PubMed

[5] Gattiker A, Michoud K, Rivoire C, Auchincloss AH, Coudert E, Lima T, Kersey P, Pagni M, Sigrist CJ, Lachaize C, et al. Automated annotation of microbial proteomes in SWISS-PROT. Comput. Biol. Chem. 2003;27:49–58. - PubMed

[6] Gattiker A, Michoud K, Rivoire C, Auchincloss AH, Coudert E, Lima T, Kersey P, Pagni M, Sigrist CJ, Lachaize C, et al. Automated annotation of microbial proteomes in SWISS-PROT. Comput. Biol. Chem. 2003;27:49–58. - PubMed

[7] Fleischmann W, Moller S, Gateau A, Apweiler R. A novel method for automatic functional annotation of proteins. Bioinformatics. 1999;15:228–233. - PubMed

[8] Fleischmann W, Moller S, Gateau A, Apweiler R. A novel method for automatic functional annotation of proteins. Bioinformatics. 1999;15:228–233. - PubMed

[9] Wu CH, Nikolskaya A, Huang H, Yeh LS, Natale DA, Vinayaka CR, Hu ZZ, Mazumder R, Kumar S, Kourtesis P, et al. PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Res. 2004;32:D112–D114. - PMC - PubMed

[10] Wu CH, Nikolskaya A, Huang H, Yeh LS, Natale DA, Vinayaka CR, Hu ZZ, Mazumder R, Kumar S, Kourtesis P, et al. PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Res. 2004;32:D112–D114. - PMC - PubMed

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The Universal Protein Resource (UniProt) in 2010

Collaborators

Affiliation

The Universal Protein Resource (UniProt) in 2010

Author

Collaborators

Affiliation

Abstract

Similar articles

Cited by

References

Publication types

MeSH terms

Substances

Grants and funding

LinkOut - more resources

Full Text Sources

Other Literature Sources