Adding structural information to the von Hippel-Lindau (VHL) tumor suppressor interaction network

FEBS Lett. 2009 Nov 19;583(22):3704-10. doi: 10.1016/j.febslet.2009.10.070. Epub 2009 Oct 28.

Abstract

The von Hippel-Lindau (VHL) tumor suppressor gene is a protein interaction hub, controlling numerous genes implicated in tumor progression. Here we focus on structural aspects of protein interactions for a list of 35 experimentally verified protein VHL (pVHL) interactors. Using structural information and computational analysis we have located three distinct interaction interfaces (A, B, and C). Interface B is the most versatile, recognizing a refined linear motif present in 17 otherwise non-related proteins. It has been possible to distinguish compatible and exclusive interactions by relating pVHL function to interaction interfaces and subcellular localization. A novel hypothesis is presented regarding the possible function of the N-terminus as an inhibitor of pVHL function.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Binding Sites / genetics
  • Carrier Proteins / chemistry*
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism
  • Computational Biology / methods
  • Databases, Protein
  • Humans
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Binding
  • Protein Structure, Tertiary*
  • Sequence Homology, Amino Acid
  • Von Hippel-Lindau Tumor Suppressor Protein / chemistry*
  • Von Hippel-Lindau Tumor Suppressor Protein / genetics
  • Von Hippel-Lindau Tumor Suppressor Protein / metabolism

Substances

  • Carrier Proteins
  • Von Hippel-Lindau Tumor Suppressor Protein
  • VHL protein, human