Dewetting-controlled binding of ligands to hydrophobic pockets

Phys Rev Lett. 2009 Oct 30;103(18):187801. doi: 10.1103/PhysRevLett.103.187801. Epub 2009 Oct 30.

Abstract

We report on a combined atomistic molecular dynamics simulation and implicit solvent analysis of a generic hydrophobic pocket-ligand (host-guest) system. The approaching ligand induces complex wetting-dewetting transitions in the weakly solvated pocket. The transitions lead to bimodal solvent fluctuations which govern magnitude and range of the pocket-ligand attraction. A recently developed implicit water model, based on the minimization of a geometric functional, captures the sensitive aqueous interface response to the concave-convex pocket-ligand configuration semiquantitatively.

Publication types

  • Letter
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Binding Sites
  • Hydrophobic and Hydrophilic Interactions*
  • Ligands
  • Models, Chemical
  • Molecular Dynamics Simulation*
  • Solvents / chemistry*
  • Water / chemistry*
  • Wettability

Substances

  • Ligands
  • Solvents
  • Water