Mapping polypeptide interactions of the SecA ATPase during translocation

Proc Natl Acad Sci U S A. 2009 Dec 8;106(49):20800-5. doi: 10.1073/pnas.0910550106. Epub 2009 Nov 20.

Abstract

Many bacterial proteins, including most secretory proteins, are translocated across the plasma membrane by the interplay of the cytoplasmic SecA ATPase and a protein-conducting channel formed by the SecY complex. SecA catalyzes the sequential movement of polypeptide segments through the SecY channel. How SecA interacts with a broad range of polypeptide segments is unclear, but structural data raise the possibility that translocation substrates bind into a "clamp" of SecA. Here, we have used disulfide bridge cross-linking to test this hypothesis. To analyze polypeptide interactions of SecA during translocation, two cysteines were introduced into a translocation intermediate: one that cross-links to the SecY channel and the other one for cross-linking to a cysteine placed at various positions in SecA. Our results show that a translocating polypeptide is indeed captured inside SecA's clamp and moves in an extended conformation through the clamp into the SecY channel. These results define the polypeptide path during SecA-mediated protein translocation and suggest a mechanism by which ATP hydrolysis by SecA is used to move a polypeptide chain through the SecY channel.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphatases / chemistry
  • Adenosine Triphosphatases / metabolism*
  • Bacterial Outer Membrane Proteins / metabolism
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism*
  • Cross-Linking Reagents / pharmacology
  • Disulfides / metabolism
  • Escherichia coli / enzymology*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / metabolism
  • Membrane Transport Proteins / chemistry
  • Membrane Transport Proteins / metabolism*
  • Peptides / metabolism*
  • Protein Binding / drug effects
  • Protein Interaction Mapping*
  • Protein Precursors / metabolism
  • Protein Structure, Secondary
  • Protein Transport / drug effects
  • SEC Translocation Channels
  • SecA Proteins
  • Tetrahydrofolate Dehydrogenase / metabolism

Substances

  • Bacterial Outer Membrane Proteins
  • Bacterial Proteins
  • Cross-Linking Reagents
  • Disulfides
  • Escherichia coli Proteins
  • Membrane Transport Proteins
  • Peptides
  • Protein Precursors
  • SEC Translocation Channels
  • SecY protein, E coli
  • outer membrane protein A precursor (E coli)
  • Tetrahydrofolate Dehydrogenase
  • Adenosine Triphosphatases
  • SecA Proteins