Molecular characterization of the Arginine decarboxylase gene family in rice

Transgenic Res. 2010 Oct;19(5):785-97. doi: 10.1007/s11248-009-9354-0. Epub 2010 Jan 16.

Abstract

Arginine decarboxylase (ADC) is a key enzyme in plants that converts arginine into putrescine, an important mediator of abiotic stress tolerance. Adc genes have been isolated from a number of dicotyledonous plants but the oat and rice Adc genes are the only representatives of monocotyledonous species described thus far. Rice has a small family of Adc genes, and OsAdc1 expression has been shown to fluctuate under drought and chilling stress. We identified and characterized a second rice Adc gene (OsAdc2) which encodes a 629-amino-acid protein with a predicted molecular mass of 67 kDa. An unusual feature of the OsAdc2 gene is the presence of an intron and a short upstream open reading frame in the 5'-UTR. Sequence comparisons showed that OsAdc2 is more closely related to the oat Adc gene than to OsAdc1 or to its dicot homologs, and mRNA analysis showed that the two rice genes are also differently regulated. Whereas OsAdc1 is expressed in leaf, root and stem, OsAdc2 expression is restricted to stem tissue. Protein expression was investigated with specific antibodies against ADC1 and ADC2, corroborating the mRNA data. We discuss the expression profiles of OsAdc1 and OsAdc2 and potential functions for the two corresponding proteins.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / genetics
  • Amino Acid Sequence
  • Base Sequence
  • Biogenic Polyamines / metabolism
  • Carboxy-Lyases / biosynthesis
  • Carboxy-Lyases / genetics*
  • Carboxy-Lyases / immunology
  • Chloroplasts / metabolism
  • Conserved Sequence
  • Gene Expression Regulation, Plant
  • Genes, Plant*
  • Introns
  • Molecular Sequence Data
  • Multigene Family*
  • Open Reading Frames
  • Organ Specificity
  • Oryza / enzymology
  • Oryza / genetics*
  • Plant Proteins / biosynthesis
  • Plant Proteins / genetics*
  • Plant Proteins / immunology
  • Plant Structures / enzymology
  • Plants / genetics
  • Protein Sorting Signals / genetics
  • Pseudogenes / genetics
  • RNA, Messenger / biosynthesis
  • RNA, Plant / biosynthesis
  • Sequence Alignment
  • Sequence Homology

Substances

  • 5' Untranslated Regions
  • Biogenic Polyamines
  • Plant Proteins
  • Protein Sorting Signals
  • RNA, Messenger
  • RNA, Plant
  • Carboxy-Lyases
  • arginine decarboxylase

Associated data

  • GENBANK/EU220429
  • GENBANK/FJ746894