XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results

Proteomics. 2010 Apr;10(7):1522-4. doi: 10.1002/pmic.200900759.

Abstract

Identification of proteins by MS plays an important role in proteomics. A crucial step concerns the identification of peptides from MS/MS spectra. The X!Tandem Project (http://www.thegpm.org/tandem) supplies an open-source search engine for this purpose. In this study, we present an open-source Java library called XTandem Parser that parses X!Tandem XML result files into an easily accessible and fully functional object model (http://xtandem-parser.googlecode.com). In addition, a graphical user interface is provided that functions as a usage example and an end-user visualization tool.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Databases, Protein
  • Peptide Fragments
  • Proteomics / methods*
  • Software*
  • Tandem Mass Spectrometry / methods*
  • User-Computer Interface*

Substances

  • Peptide Fragments