Crystal structure of cleaved human alpha 1-antichymotrypsin at 2.7 A resolution and its comparison with other serpins

J Mol Biol. 1991 Apr 5;218(3):595-606. doi: 10.1016/0022-2836(91)90704-a.

Abstract

The crystal structure of proteolytically modified human alpha 1-antichymotrypsin (ACT), a member of the serpin superfamily, has been solved by Paterson search techniques and refined to an R-factor of 18.0% at 2.7 A resolution with mean deviations from standard bond lengths and angles of 0.013 A and 3.1 degrees, respectively. The final model consists of 374 amino acid residues, 126 solvent molecules and five sugar residues. Asn70 could be identified unambiguously as a glycosylation site and Asn104 is probably also glycosylated. The structure of cleaved ACT is compared with cleaved alpha 1-antitrypsin (alpha 1 PI) and with plakalbumin, which are prototypical models for cleaved and intact serpins, respectively. Cleaved ACT is very similar to cleaved alpha 1 PI; in particular, it has strand s4A, which is liberated by proteolysis, inserted as the middle strand in beta-sheet A. ACT and alpha 1 PI differ locally only at sites of insertions, except at the segment s3C-turn-s4C, which is displaced by several angström units. This region of ACT is involved in DNA binding.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Carbohydrate Sequence
  • Carbohydrates / chemistry
  • Glycosylation
  • Humans
  • Hydrogen Bonding
  • Molecular Sequence Data
  • Ovalbumin / chemistry*
  • Ovalbumin / metabolism
  • Peptide Fragments / chemistry*
  • Peptide Fragments / metabolism
  • Protein Conformation
  • Sequence Alignment
  • X-Ray Diffraction
  • alpha 1-Antichymotrypsin / chemistry*
  • alpha 1-Antichymotrypsin / metabolism
  • alpha 1-Antitrypsin / chemistry*
  • alpha 1-Antitrypsin / metabolism

Substances

  • Carbohydrates
  • Peptide Fragments
  • alpha 1-Antichymotrypsin
  • alpha 1-Antitrypsin
  • plakalbumin
  • Ovalbumin

Associated data

  • PDB/UNKNOWN