A diagnostic method based on MGB probes for rapid detection and simultaneous differentiation between virulent and vaccine strains of avian paramyxovirus type 1

J Virol Methods. 2010 Jun;166(1-2):28-36. doi: 10.1016/j.jviromet.2010.02.012. Epub 2010 Feb 17.

Abstract

Newcastle disease virus (NDV), also designated avian paramyxovirus type 1 (APMV-1), is a serious pathogen of poultry, causing highly contagious Newcastle disease (ND), with high morbidity or mortality, depending on the strain. Accordingly, rapid and reliable detection of APMV-1 and differentiation between vaccine and virulent strains is of crucial importance for ND diagnosis and plays an important role in effective control of the disease. In this study, two real-time reverse transcription polymerase chain reaction (real-time RT-PCR) assays using minor groove-binding (MGB) probes were developed for broad range detection and simultaneous pathotyping of APMV-1. The two assays were evaluated for their ability to detect in allantoic fluids viral RNA of all known APMV-1 lineages. Additionally, the applicability of the developed assays was assessed by the detection and pathotype prediction of APMV-1 in swabs and organs. The assays demonstrated high analytical specificity, sensitivity and good reproducibility, with coefficients of variation ranging from 0.2% to 3.9% and from 0.6% to 7.2% for intra-assay and inter-assay variability, respectively. The results indicated the suitability of both assays as a complementary method for rapid screening and typing of APMV-1.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animal Structures / virology
  • Animals
  • Avulavirus / classification*
  • Avulavirus / genetics
  • Avulavirus / isolation & purification*
  • Base Sequence
  • Bird Diseases / diagnosis*
  • Bird Diseases / virology
  • Chickens
  • Columbidae
  • Molecular Sequence Data
  • Newcastle Disease / diagnosis*
  • Newcastle Disease / virology
  • Oligonucleotide Probes / genetics
  • Poultry Diseases / diagnosis*
  • Poultry Diseases / virology
  • RNA, Viral / analysis
  • RNA, Viral / genetics
  • Reproducibility of Results
  • Reverse Transcriptase Polymerase Chain Reaction / methods
  • Sensitivity and Specificity
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Viral Vaccines*

Substances

  • Oligonucleotide Probes
  • RNA, Viral
  • Viral Vaccines

Associated data

  • GENBANK/GU002424
  • GENBANK/GU002425
  • GENBANK/GU002426
  • GENBANK/GU002427
  • GENBANK/GU002428
  • GENBANK/GU002429
  • GENBANK/GU002430
  • GENBANK/GU002431
  • GENBANK/GU002432
  • GENBANK/GU002433
  • GENBANK/GU002434
  • GENBANK/GU002435
  • GENBANK/GU002436
  • GENBANK/GU002437
  • GENBANK/GU002438
  • GENBANK/GU002439
  • GENBANK/GU002440
  • GENBANK/GU002441
  • GENBANK/GU002442
  • GENBANK/GU002443
  • GENBANK/GU002444
  • GENBANK/GU002445