RNase T2 genes from rice and the evolution of secretory ribonucleases in plants

Mol Genet Genomics. 2010 Apr;283(4):381-96. doi: 10.1007/s00438-010-0524-9. Epub 2010 Feb 25.

Abstract

The plant RNase T2 family is divided into two different subfamilies. S-RNases are involved in rejection of self-pollen during the establishment of self-incompatibility in three plant families. S-like RNases, on the other hand, are not involved in self-incompatibility, and although gene expression studies point to a role in plant defense and phosphate recycling, their biological roles are less well understood. Although S-RNases have been subjects of many phylogenetic studies, few have included an extensive analysis of S-like RNases, and genome-wide analyses to determine the number of S-like RNases in fully sequenced plant genomes are missing. We characterized the eight RNase T2 genes present in the Oryza sativa genome; and we also identified the full complement of RNase T2 genes present in other fully sequenced plant genomes. Phylogenetics and gene expression analyses identified two classes among the S-like RNase subfamily. Class I genes show tissue specificity and stress regulation. Inactivation of RNase activity has occurred repeatedly throughout evolution. On the other hand, Class II seems to have conserved more ancestral characteristics; and, unlike other S-like RNases, genes in this class are conserved in all plant species analyzed and most are constitutively expressed. Our results suggest that gene duplication resulted in high diversification of Class I genes. Many of these genes are differentially expressed in response to stress, and we propose that protein characteristics, such as the increase in basic residues can have a defense role independent of RNase activity. On the other hand, constitutive expression and phylogenetic conservation suggest that Class II S-like RNases may have a housekeeping role.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Conserved Sequence
  • Endoribonucleases / chemistry
  • Endoribonucleases / genetics*
  • Evolution, Molecular*
  • Gene Expression Regulation, Enzymologic
  • Gene Expression Regulation, Plant
  • Genome, Plant
  • Isoenzymes / genetics
  • Molecular Sequence Data
  • Mutation
  • Oryza / enzymology*
  • Oryza / genetics
  • Phylogeny
  • Sequence Alignment

Substances

  • Isoenzymes
  • Endoribonucleases
  • ribonuclease T(2)