Apo and ligand-bound structures of ModA from the archaeon Methanosarcina acetivorans

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Mar 1;66(Pt 3):242-50. doi: 10.1107/S1744309109055158. Epub 2010 Feb 23.

Abstract

The trace-element oxyanion molybdate, which is required for the growth of many bacterial and archaeal species, is transported into the cell by an ATP-binding cassette (ABC) transporter superfamily uptake system called ModABC. ModABC consists of the ModA periplasmic solute-binding protein, the integral membrane-transport protein ModB and the ATP-binding and hydrolysis cassette protein ModC. In this study, X-ray crystal structures of ModA from the archaeon Methanosarcina acetivorans (MaModA) have been determined in the apoprotein conformation at 1.95 and 1.69 A resolution and in the molybdate-bound conformation at 2.25 and 2.45 A resolution. The overall domain structure of MaModA is similar to other ModA proteins in that it has a bilobal structure in which two mixed alpha/beta domains are linked by a hinge region. The apo MaModA is the first unliganded archaeal ModA structure to be determined: it exhibits a deep cleft between the two domains and confirms that upon binding ligand one domain is rotated towards the other by a hinge-bending motion, which is consistent with the 'Venus flytrap' model seen for bacterial-type periplasmic binding proteins. In contrast to the bacterial ModA structures, which have tetrahedral coordination of their metal substrates, molybdate-bound MaModA employs octahedral coordination of its substrate like other archaeal ModA proteins.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • ATP-Binding Cassette Transporters / chemistry*
  • ATP-Binding Cassette Transporters / metabolism
  • Amino Acid Sequence
  • Apoproteins / chemistry*
  • Apoproteins / metabolism
  • Archaeal Proteins / chemistry*
  • Archaeal Proteins / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Ligands
  • Methanosarcina / chemistry*
  • Methanosarcina / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Binding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Sequence Alignment
  • Substrate Specificity

Substances

  • ATP-Binding Cassette Transporters
  • Apoproteins
  • Archaeal Proteins
  • Ligands

Associated data

  • PDB/3K6U
  • PDB/3K6V
  • PDB/3K6W
  • PDB/3K6X