PanCGHweb: a web tool for genotype calling in pangenome CGH data

Bioinformatics. 2010 May 1;26(9):1256-7. doi: 10.1093/bioinformatics/btq103. Epub 2010 Mar 10.

Abstract

A pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genotype based on pangenome microarray data.

Availability: PanCGHweb, the web tool is accessible from: http://bamics2.cmbi.ru.nl/websoftware/pancgh/.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Computational Biology / methods*
  • Genetic Variation
  • Genome
  • Genomics
  • Genotype*
  • Internet
  • Lactococcus lactis / genetics
  • Models, Genetic
  • Nucleic Acid Hybridization
  • Oligonucleotide Array Sequence Analysis
  • Open Reading Frames
  • Phylogeny
  • Sequence Analysis, DNA
  • Software