Enzymatic degradation of hybrid iota-/nu-carrageenan by Alteromonas fortis iota-carrageenase

Carbohydr Res. 2010 May 7;345(7):934-40. doi: 10.1016/j.carres.2010.02.014. Epub 2010 Feb 19.

Abstract

Hybrid iota-/nu-carrageenan was water-extracted from Eucheuma denticulatum and incubated with Alteromonas fortis iota-carrageenase. The degradation products were then separated by anion-exchange chromatography. The three most abundant fractions of hybrid iota-/nu-carrageenan oligosaccharides were purified and their structures were analyzed by NMR. The smallest hybrid was an octasaccharide with a iota-iota-nu-iota structure. The second fraction was composed of two decasaccharides with iota-iota-iota-nu-iota and iota-[iota/nu]-iota-iota structures. The third fraction was a mixture of dodecasaccharides which contained at least a iota-iota-iota-iota-nu-iota oligosaccharide. The carbon and proton NMR spectra of the octasaccharides were completely assigned, thereby completely attributing the nu-carrabiose moiety for the first time.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alteromonas / enzymology*
  • Carrageenan / chemistry*
  • Carrageenan / metabolism*
  • Glycoside Hydrolases / metabolism*
  • Magnetic Resonance Spectroscopy
  • Rhodophyta / chemistry

Substances

  • Carrageenan
  • Glycoside Hydrolases