Sites of interaction of the CCA end of peptidyl-tRNA with 23S rRNA

Proc Natl Acad Sci U S A. 1991 May 1;88(9):3725-8. doi: 10.1073/pnas.88.9.3725.

Abstract

Oligonucleotide fragments derived from the 3' CCA terminus of acylated tRNA, such as CACCA-(AcPhe), UACCA-(AcLeu), and CAACCA-(fMet), bind specifically to ribosomes in the presence of sparsomycin and methanol [Monro, R. E., Celma, M. L. & Vazquez, D. (1969) Nature (London) 222, 356-358]. All three oligonucleotides protect a characteristic set of bases in 23S rRNA from chemical probes: G2252, G2253, A2439, A2451, U2506, and U2585. A2602 shows enhanced reactivity. These account for most of the same bases that are protected when peptidyl-tRNA analogues such as AcPhe-tRNA are bound to the ribosomal P site, and correspond precisely to those bases whose protection is abolished by removal of the 3'-CA end of tRNA. We conclude that most of the observed interactions between tRNA and 23S rRNA in the 50S ribosomal P site involve the conserved CCA terminus of tRNA. Sparsomycin may inhibit protein synthesis by stabilizing interaction between the peptidyl-CCA and the 23S P site, preventing formation of the intermediate A/P hybrid state.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Binding Sites
  • Escherichia coli
  • In Vitro Techniques
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Oligonucleotides / chemistry
  • Oligonucleotides / metabolism
  • Protein Biosynthesis
  • RNA, Ribosomal, 23S / metabolism*
  • RNA, Transfer / metabolism*
  • Ribosomes / metabolism
  • Sparsomycin / pharmacology
  • Structure-Activity Relationship

Substances

  • Oligonucleotides
  • RNA, Ribosomal, 23S
  • Sparsomycin
  • RNA, Transfer