Characterization of HIV-1 REV protein: binding stoichiometry and minimal RNA substrate

Nucleic Acids Res. 1991 Apr 11;19(7):1577-83. doi: 10.1093/nar/19.7.1577.

Abstract

The HIV-1 REV protein binds to the stem II region of the REV-responsive element (RNA). Studies to further define the RNA sequence and structure specifically bound by REV protein identify a minimal RNA element of 40 nucleotides. Analysis of RNA fragments by gel retardation and filter binding suggest that a core element composed of one particular stem with flanking sequences capable of forming a second double stranded region is essential for specific recognition by REV protein. Stable REV-RNA complexes are formed in a stoichiometry of 1 REV: 1 RNA. The minimal RNA element binds 1 REV molecule while the stem II saturates at 3 REV molecules per RNA. These results establish that REV recognizes a primary binding site within the RRE and support the notion that the initial viral transcript binding event involves a monomeric REV protein.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Autoradiography
  • Base Sequence
  • Gene Products, rev / chemistry*
  • Gene Products, rev / metabolism
  • Genes, Viral
  • Genes, env*
  • HIV-1 / genetics*
  • HIV-1 / metabolism
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • RNA, Viral / chemistry*
  • RNA, Viral / metabolism
  • rev Gene Products, Human Immunodeficiency Virus

Substances

  • Gene Products, rev
  • RNA, Viral
  • rev Gene Products, Human Immunodeficiency Virus