Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds

Genome Res. 2010 Apr;20(4):512-8. doi: 10.1101/gr.102343.109. Epub 2010 Mar 31.

Abstract

We compared global patterns of gene expression between two bird species, the chicken and zebra finch, with regard to sex bias of autosomal versus Z chromosome genes, dosage compensation, and evolution of sex bias. Both species appear to lack a Z chromosome-wide mechanism of dosage compensation, because both have a similar pattern of significantly higher expression of Z genes in males relative to females. Unlike the chicken Z chromosome, which has female-specific expression of the noncoding RNA MHM (male hypermethylated) and acetylation of histone 4 lysine 16 (H4K16) near MHM, the zebra finch Z chromosome appears to lack the MHM sequence and acetylation of H4K16. The zebra finch also does not show the reduced male-to-female (M:F) ratio of gene expression near MHM similar to that found in the chicken. Although the M:F ratios of Z chromosome gene expression are similar across tissues and ages within each species, they differ between the two species. Z genes showing the greatest species difference in M:F ratio were concentrated near the MHM region of the chicken Z chromosome. This study shows that the zebra finch differs from the chicken because it lacks a specialized region of greater dosage compensation along the Z chromosome, and shows other differences in sex bias. These patterns suggest that different avian taxa may have evolved specific compensatory mechanisms.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Birds / genetics
  • Birds / metabolism
  • Chickens / genetics*
  • Chickens / metabolism
  • Chromosome Mapping
  • Comparative Genomic Hybridization
  • Dosage Compensation, Genetic* / genetics
  • Evolution, Molecular
  • Female
  • Finches / genetics*
  • Finches / metabolism
  • Genome / genetics*
  • Histones / metabolism
  • Male
  • Oligonucleotide Array Sequence Analysis
  • Sex Characteristics*
  • Sex Chromosomes / chemistry
  • Sex Chromosomes / genetics
  • Species Specificity
  • Synteny / genetics

Substances

  • Histones