DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment

ISME J. 2010 Oct;4(10):1314-25. doi: 10.1038/ismej.2010.54. Epub 2010 Apr 29.

Abstract

Global groundwater resources are constantly challenged by a multitude of contaminants such as aromatic hydrocarbons. Especially in anaerobic habitats, a large diversity of unrecognized microbial populations may be responsible for their degradation. Still, our present understanding of the respective microbiota and their ecophysiology is almost exclusively based on a small number of cultured organisms, mostly within the Proteobacteria. Here, by DNA-based stable isotope probing (SIP), we directly identified the most active sulfate-reducing toluene degraders in a diverse sedimentary microbial community originating from a tar-oil-contaminated aquifer at a former coal gasification plant. On incubation of fresh sediments with (13)C(7)-toluene, the production of both sulfide and (13)CO(2) was clearly coupled to the (13)C-labeling of DNA of microbes related to Desulfosporosinus spp. within the Peptococcaceae (Clostridia). The screening of labeled DNA fractions also suggested a novel benzylsuccinate synthase alpha-subunit (bssA) sequence type previously only detected in the environment to be tentatively affiliated with these degraders. However, carbon flow from the contaminant into degrader DNA was only ∼50%, pointing toward high ratios of heterotrophic CO(2)-fixation during assimilation of acetyl-CoA originating from the contaminant by these degraders. These findings demonstrate that the importance of non-proteobacterial populations in anaerobic aromatics degradation, as well as their specific ecophysiology in the subsurface may still be largely ungrasped.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Carbon Dioxide / metabolism
  • Carbon-Carbon Lyases / genetics
  • DNA / genetics*
  • DNA / isolation & purification*
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Environmental Microbiology*
  • Environmental Pollutants / metabolism
  • Molecular Sequence Data
  • Oxidation-Reduction
  • Peptococcaceae / genetics
  • Peptococcaceae / isolation & purification*
  • Peptococcaceae / metabolism*
  • Petroleum / metabolism
  • Sequence Analysis, DNA
  • Sulfates / metabolism*
  • Tars / metabolism
  • Toluene / metabolism*

Substances

  • Bacterial Proteins
  • DNA, Bacterial
  • Environmental Pollutants
  • Petroleum
  • Sulfates
  • Tars
  • Carbon Dioxide
  • Toluene
  • DNA
  • Carbon-Carbon Lyases
  • benzylsuccinate synthase

Associated data

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