Solution structure of the N-terminal domain of DC-UbP/UBTD2 and its interaction with ubiquitin

Protein Sci. 2010 May;19(5):1104-9. doi: 10.1002/pro.386.

Abstract

DC-UbP/UBTD2 is a ubiquitin (Ub) domain-containing protein first identified from dendritic cells, and is implicated in ubiquitination pathway. The solution structure and backbone dynamics of the C-terminal Ub-like (UbL) domain were elucidated in our previous work. To further understand the biological function of DC-UbP, we then solved the solution structure of the N-terminal domain of DC-UbP (DC-UbP_N) and studied its Ub binding properties by NMR techniques. The results show that DC-UbP_N holds a novel structural fold and acts as a Ub-binding domain (UBD) but with low affinity. This implies that the DC-UbP protein, composing of a combination of both UbL and UBD domains, might play an important role in regulating protein ubiquitination and delivery of ubiquitinated substrates in eukaryotic cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Dendritic Cells / chemistry
  • Escherichia coli / genetics
  • Humans
  • Models, Molecular
  • Models, Statistical
  • Nuclear Magnetic Resonance, Biomolecular / methods*
  • Protein Structure, Tertiary / genetics
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Ubiquitin / chemistry*
  • Ubiquitin / metabolism
  • Ubiquitins / chemistry*
  • Ubiquitins / genetics
  • Ubiquitins / metabolism

Substances

  • Recombinant Proteins
  • UBTD2 protein, human
  • Ubiquitin
  • Ubiquitins