Specific hybridization probes for mouse type I, II, III and IX collagen mRNAs

Biochim Biophys Acta. 1991 Jun 13;1089(2):241-3. doi: 10.1016/0167-4781(91)90014-d.


We have constructed DNA probes for the specific detection of mouse pro alpha 1(I), pro alpha 1(II), pro alpha 1(III) and alpha 1(IX) collagen transcripts. To avoid cross-hybridization the probes for fibrillar collagens cover mainly sequences in the 3' untranslated region of the gene. Sequencing and Northern analysis confirmed that the clones share minimal sequence similarity and detect only the specific mRNAs under normal hybridization and washing conditions. The clone for mouse alpha 1(IX) collagen covers coding sequences but is sufficiently divergent from other collagen transcripts to allow specific detection of the corresponding mRNA.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Blotting, Northern
  • Collagen / genetics*
  • DNA Probes*
  • Mice
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • RNA, Messenger / genetics*
  • Transcription, Genetic


  • DNA Probes
  • RNA, Messenger
  • Collagen

Associated data

  • GENBANK/M75971
  • GENBANK/M75972
  • GENBANK/M75973
  • GENBANK/M75974
  • GENBANK/M75975
  • GENBANK/S59357
  • GENBANK/X57981
  • GENBANK/X57982
  • GENBANK/X57983
  • GENBANK/X57984