Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68

J Virol. 2010 Oct;84(19):10266-75. doi: 10.1128/JVI.01119-10. Epub 2010 Jul 28.


Murine gammaherpesvirus 68 (MHV-68) is closely related to Epstein-Barr virus (EBV) and Kaposi's sarcoma-associated herpesvirus (KSHV) and provides a small-animal model with which to study the pathogenesis of gammaherpesvirus (gammaHV) infections. To completely explore the potential of the MHV-68 system for the investigation of gammaHV microRNAs (miRNAs), it would be desirable to know the number and expression patterns of all miRNAs encoded by MHV-68. By deep sequencing of small RNAs, we systematically investigated the expression profiles of MHV-68 miRNAs in both lytically and persistently infected cells. In addition to the nine known MHV-68 miRNAs, we identified six novel MHV-68 miRNA genes and analyzed the expression levels of all MHV-68 miRNAs. Furthermore, we also characterized the cellular miRNA expression signatures in MHV-68-infected versus noninfected NIH 3T3 fibroblasts and in 12-O-tetradecanoyl-phorbol-13-acetate (TPA)-treated versus nontreated S11 cells. We found that mmu-mir-15b and mmu-mir-16 are highly upregulated upon MHV-68 infection of NIH 3T3 cells, indicating a potential role for cellular miRNAs during MHV-68 infection. Our data will aid in the full exploration of the functions of gammaHV miRNAs.

Publication types

  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Animals
  • Base Sequence
  • Cell Line
  • DNA Primers / genetics
  • Gene Expression Profiling
  • Genome, Viral
  • Host-Pathogen Interactions / genetics
  • Mice
  • MicroRNAs / chemistry
  • MicroRNAs / genetics*
  • NIH 3T3 Cells
  • Nucleic Acid Conformation
  • RNA, Viral / chemistry
  • RNA, Viral / genetics*
  • Rhadinovirus / genetics*
  • Rhadinovirus / pathogenicity
  • Rhadinovirus / physiology
  • Sequence Analysis, RNA


  • DNA Primers
  • MicroRNAs
  • RNA, Viral