Determination of the G and P types of previously nontypeable rotavirus strains from the African Rotavirus Network, 1996-2004: Identification of unusual G types

J Infect Dis. 2010 Sep 1:202 Suppl:S49-54. doi: 10.1086/653552.

Abstract

A total of 215 nontypeable rotavirus samples collected from children <5 years of age by members of the African Rotavirus Network were characterized using reverse-transcription polymerase chain reaction analysis and sequencing. The most predominant strain identified was P[8]G1 (46.9%). Genotypes P[8]G10, P[8]G8, P[6]G8, and P[7]G5 were also detected at frequencies varying from 0.5% to 2.3%. This study suggests that reassortment of unusual G types into a background of globally common genotype P[8] strains may be a major mechanism of generating rotavirus diversity. Nucleotide substitutions at the P[8], P[6], and G1 primer binding sites accounted for the failure to type these strains initially. Hence, these findings highlight the need for regular evaluation of rotavirus genotyping methods.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Africa / epidemiology
  • Gene Expression Regulation, Viral / physiology
  • Genetic Variation
  • Genotype
  • Humans
  • Molecular Sequence Data
  • Reverse Transcriptase Polymerase Chain Reaction
  • Rotavirus / classification*
  • Rotavirus / genetics*
  • Rotavirus Infections / epidemiology
  • Rotavirus Infections / virology
  • Serotyping
  • Viral Proteins / genetics*
  • Viral Proteins / metabolism

Substances

  • Viral Proteins

Associated data

  • GENBANK/EF218662
  • GENBANK/EF218663
  • GENBANK/EF218664
  • GENBANK/EF218665
  • GENBANK/EF218666
  • GENBANK/EF218667
  • GENBANK/EF218668
  • GENBANK/EF218669
  • GENBANK/EF218670
  • GENBANK/EF218671
  • GENBANK/EF218672
  • GENBANK/EF218673
  • GENBANK/EF218674
  • GENBANK/EF218675
  • GENBANK/EF218676
  • GENBANK/EF218677
  • GENBANK/EF218678