Structure of Rpn10 and its interactions with polyubiquitin chains and the proteasome subunit Rpn12

J Biol Chem. 2010 Oct 29;285(44):33992-4003. doi: 10.1074/jbc.M110.134510. Epub 2010 Aug 24.

Abstract

Schizosaccharomyces pombe Rpn10 (SpRpn10) is a proteasomal ubiquitin (Ub) receptor located within the 19 S regulatory particle where it binds to subunits of both the base and lid subparticles. We have solved the structure of full-length SpRpn10 by determining the crystal structure of the von Willebrand factor type A domain and characterizing the full-length protein by NMR. We demonstrate that the single Ub-interacting motif (UIM) of SpRpn10 forms a 1:1 complex with Lys(48)-linked diUb, which it binds selectively over monoUb and Lys(63)-linked diUb. We further show that the SpRpn10 UIM binds to SpRpn12, a subunit of the lid subparticle, with an affinity comparable with Lys(48)-linked diUb. This is the first observation of a UIM binding other than a Ub fold and suggests that SpRpn12 could modulate the activity of SpRpn10 as a proteasomal Ub receptor.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Calorimetry / methods
  • Carrier Proteins / metabolism*
  • Humans
  • Kinetics
  • Lysine / chemistry
  • Magnetic Resonance Spectroscopy / methods
  • Polyubiquitin / chemistry*
  • Proteasome Endopeptidase Complex / metabolism*
  • Protein Binding
  • RNA-Binding Proteins
  • Schizosaccharomyces / metabolism*
  • Schizosaccharomyces pombe Proteins / metabolism*
  • Signal Transduction
  • Surface Plasmon Resonance
  • Ubiquitin / chemistry
  • von Willebrand Factor / chemistry

Substances

  • Carrier Proteins
  • RNA-Binding Proteins
  • RPN12 protein, S pombe
  • Schizosaccharomyces pombe Proteins
  • Ubiquitin
  • pus1 protein, S pombe
  • von Willebrand Factor
  • Polyubiquitin
  • Proteasome Endopeptidase Complex
  • Lysine

Associated data

  • PDB/2X5N