Structural analysis and molecular modeling of the RvH2-e functional unit of Rapana venosa hemocyanin

Abstract

Rapana venosa hemocyanin (RvH), a circulating glycoprotein of the marine snail, has a complex structure. To provide details on the stability of the protein, one functional unit, RvH2-e, was compared with the native molecule and the structural subunits, RvH1 and RvH2, via pH-T diagrams, typical phase portraits for stability and denaturation reversibility. By analyzing the T transition curves of RvH2-e at different pH values, several parameters of the thermodynamic functions were obtained. Increasing the temperature from 25°C to 55°C, the reversibility of the molecule of protein also increases, opening a reversibility window within the range of pH 4.0-8.0. On analyzing the pH transition curves, the start of the acid denaturation (below pH 6) and alkaline denaturation (above pH 9) was determined to be between 20°C and 35°C. For this range, the thermodynamic functions ΔH° and ΔG° for a standard temperature of 25°C were calculated.