Structural characterization of a beta-turn mimic within a protein-protein interface

Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18336-41. doi: 10.1073/pnas.1004187107. Epub 2010 Oct 11.

Abstract

β-Turns are secondary structure elements not only exposed on protein surfaces, but also frequently found to be buried in protein-protein interfaces. Protein engineering so far considered mainly the backbone-constraining properties of synthetic β-turn mimics as parts of surface-exposed loops. A β-turn mimic, Hot═Tap, that is available in gram amounts, provides two hydroxyl groups that enhance its turn-inducing properties besides being able to form side-chain-like interactions. NMR studies on cyclic hexapeptides harboring the Hot═Tap dipeptide proved its strong β-turn-inducing capability. Crystallographic analyses of the trimeric fibritin-foldon/Hot═Tap hybrid reveal at atomic resolution how Hot═Tap replaces a βI'-turn by a βII'-type structure. Furthermore, Hot═Tap adapts to the complex protein environment by participating in several direct and water-bridged interactions across the foldon trimer interface. As building blocks, β-turn mimics capable of both backbone and side-chain mimicry may simplify the design of synthetic proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallography, X-Ray
  • Models, Molecular
  • Molecular Mimicry
  • Nuclear Magnetic Resonance, Biomolecular
  • Oligopeptides / chemistry
  • Protein Engineering
  • Protein Interaction Domains and Motifs
  • Protein Structure, Secondary
  • Proteins / chemistry*
  • Recombinant Fusion Proteins / chemistry
  • Viral Proteins / chemistry

Substances

  • Oligopeptides
  • Proteins
  • Recombinant Fusion Proteins
  • Viral Proteins
  • fibritin protein, Enterobacteria phage T4

Associated data

  • PDB/2WW6
  • PDB/2WW7