Characterization of LINE-1 ribonucleoprotein particles

PLoS Genet. 2010 Oct 7;6(10):e1001150. doi: 10.1371/journal.pgen.1001150.

Abstract

The average human genome contains a small cohort of active L1 retrotransposons that encode two proteins (ORF1p and ORF2p) required for their mobility (i.e., retrotransposition). Prior studies demonstrated that human ORF1p, L1 RNA, and an ORF2p-encoded reverse transcriptase activity are present in ribonucleoprotein (RNP) complexes. However, the inability to physically detect ORF2p from engineered human L1 constructs has remained a technical challenge in the field. Here, we have employed an epitope/RNA tagging strategy with engineered human L1 retrotransposons to identify ORF1p, ORF2p, and L1 RNA in a RNP complex. We next used this system to assess how mutations in ORF1p and/or ORF2p impact RNP formation. Importantly, we demonstrate that mutations in the coiled-coil domain and RNA recognition motif of ORF1p, as well as the cysteine-rich domain of ORF2p, reduce the levels of ORF1p and/or ORF2p in L1 RNPs. Finally, we used this tagging strategy to localize the L1-encoded proteins and L1 RNA to cytoplasmic foci that often were associated with stress granules. Thus, we conclude that a precise interplay among ORF1p, ORF2p, and L1 RNA is critical for L1 RNP assembly, function, and L1 retrotransposition.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites / genetics
  • Blotting, Western
  • Cell Line, Tumor
  • Cytoplasm / metabolism
  • Gene Expression
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • In Situ Hybridization, Fluorescence
  • Long Interspersed Nucleotide Elements / genetics*
  • Mutagenesis, Insertional
  • Mutation
  • Open Reading Frames / genetics*
  • Plasmids / genetics
  • RNA / metabolism
  • RNA-Directed DNA Polymerase / genetics
  • RNA-Directed DNA Polymerase / metabolism
  • Reverse Transcriptase Polymerase Chain Reaction
  • Ribonucleoproteins / genetics*
  • Ribonucleoproteins / metabolism
  • Transfection

Substances

  • Ribonucleoproteins
  • RNA
  • RNA-Directed DNA Polymerase