Herpes simplex virus type 1 helicase-primase: DNA binding and consequent protein oligomerization and primase activation

J Virol. 2011 Jan;85(2):968-78. doi: 10.1128/JVI.01690-10. Epub 2010 Nov 10.

Abstract

The heterotrimeric helicase-primase complex of herpes simplex virus type I (HSV-1), consisting of UL5, UL8, and UL52, possesses 5' to 3' helicase, single-stranded DNA (ssDNA)-dependent ATPase, primase, and DNA binding activities. In this study we confirm that the UL5-UL8-UL52 complex has higher affinity for forked DNA than for ssDNA and fails to bind to fully annealed double-stranded DNA substrates. In addition, we show that a single-stranded overhang of greater than 6 nucleotides is required for efficient enzyme loading and unwinding. Electrophoretic mobility shift assays and surface plasmon resonance analysis provide additional quantitative information about how the UL5-UL8-UL52 complex associates with the replication fork. Although it has previously been reported that in the absence of DNA and nucleoside triphosphates the UL5-UL8-UL52 complex exists as a monomer in solution, we now present evidence that in the presence of forked DNA and AMP-PNP, higher-order complexes can form. Electrophoretic mobility shift assays reveal two discrete complexes with different mobilities only when helicase-primase is bound to DNA containing a single-stranded region, and surface plasmon resonance analysis confirms larger amounts of the complex bound to forked substrates than to single-overhang substrates. Furthermore, we show that primase activity exhibits a cooperative dependence on protein concentration while ATPase and helicase activities do not. Taken together, these data suggest that the primase activity of the helicase-primase requires formation of a dimer or higher-order structure while ATPase activity does not. Importantly, this provides a simple mechanism for generating a two-polymerase replisome at the replication fork.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • DNA / metabolism*
  • DNA Helicases / metabolism*
  • DNA Primase / metabolism*
  • DNA, Single-Stranded / metabolism*
  • Electrophoretic Mobility Shift Assay
  • Herpesvirus 1, Human / enzymology*
  • Protein Binding
  • Protein Multimerization*
  • Surface Plasmon Resonance
  • Viral Proteins / metabolism*

Substances

  • DNA, Single-Stranded
  • Viral Proteins
  • DNA
  • DNA Primase
  • helicase-primase, Human herpesvirus 1
  • DNA Helicases