Serendipitous discovery of α-hydroxyalkyl esters as β-lactamase substrates

Biochemistry. 2010 Dec 14;49(49):10496-506. doi: 10.1021/bi101071r. Epub 2010 Nov 18.

Abstract

O-(1-Carboxy-1-alkyloxycarbonyl) hydroxamates were found to spontaneously decarboxylate in aqueous neutral buffer to form O-(2-hydroxyalkylcarbonyl) hydroxamates. While the former molecules do not react rapidly with serine β-lactamases, the latter are quite good substrates of representative class A and C, but not D, enzymes, and particularly of a class C enzyme. The enzymes catalyze hydrolysis of these compounds to a mixture of the α-hydroxy acid and hydroxamate. Analogous compounds containing aryloxy leaving groups rather that hydroxamates are also substrates. Structure-activity experiments showed that the α-hydroxyl group was required for any substantial substrate activity. Although both d- and l-α-hydroxy acid derivatives were substrates, the former were preferred. The response of the class C activity to pH and to alternative nucleophiles (methanol and d-phenylalanine) suggested that the same active site functional groups participated in catalysis as for classical substrates. Molecular modeling was employed to explore how the α-hydroxy group might interact with the class C β-lactamase active site. Incorporation of the α-hydroxyalkyl moiety into novel inhibitors will be of considerable interest.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural

MeSH terms

  • Actinomycetales / enzymology
  • Alkylation / physiology
  • Alkynes / chemistry*
  • Alkynes / metabolism
  • Binding, Competitive
  • Drug Discovery / methods*
  • Enterobacter cloacae / enzymology
  • Escherichia coli / enzymology
  • Esters
  • Hydrolysis
  • Models, Molecular
  • Streptomyces / enzymology
  • Substrate Specificity / physiology
  • beta-Lactamases / chemistry*
  • beta-Lactamases / classification
  • beta-Lactamases / metabolism

Substances

  • Alkynes
  • Esters
  • beta-Lactamases