Population-specific documentation of pharmacogenomic markers and their allelic frequencies in FINDbase

Pharmacogenomics. 2011 Jan;12(1):49-58. doi: 10.2217/pgs.10.169.

Abstract

Aims: Population and ethnic group-specific allele frequencies of pharmacogenomic markers are poorly documented and not systematically collected in structured data repositories. We developed the Frequency of Inherited Disorders Pharmacogenomics database (FINDbase-PGx), a separate module of the FINDbase, aiming to systematically document pharmacogenomic allele frequencies in various populations and ethnic groups worldwide.

Materials & methods: We critically collected and curated 214 scientific articles reporting pharmacogenomic markers allele frequencies in various populations and ethnic groups worldwide. Subsequently, in order to host the curated data, support data visualization and data mining, we developed a website application, utilizing Microsoft™ PivotViewer software.

Results: Curated allelic frequency data pertaining to 144 pharmacogenomic markers across 14 genes, representing approximately 87,000 individuals from 150 populations worldwide, are currently included in FINDbase-PGx. A user-friendly query interface allows for easy data querying, based on numerous content criteria, such as population, ethnic group, geographical region, gene, drug and rare allele frequency.

Conclusion: FINDbase-PGx is a comprehensive database, which, unlike other pharmacogenomic knowledgebases, fulfills the much needed requirement to systematically document pharmacogenomic allelic frequencies in various populations and ethnic groups worldwide.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Databases, Genetic*
  • Ethnic Groups / genetics*
  • Gene Frequency*
  • Genetic Diseases, Inborn / genetics*
  • Genetic Markers
  • Genetics, Population*
  • Humans
  • Pharmacogenetics*
  • User-Computer Interface

Substances

  • Genetic Markers